Benjamin

File format and reproducibility

Science is more about limiting doubts than creating certainties. To limit doubt, the reproduction of the same experiment should lead to draw the same conclusions, again and again. This is called the reproducibility, and it is a big deal in science. Actually, this is what makes scientific findings valid. This topic has received an increasing attention in the last years:

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The transition achievement

It’s been nearly a year that I haven’t written anything here. The power of procrastination is terrible. Well, it is not only procrastination. Or procrastination with excuse. I use a todo app to keep tracks of my tasks, and I’ve been keeping on postponing this Write-something-on-my-blog-todo as I couldn’t quickly see a nice topic to write about. Let’s be honest, I probably haven’t tried that hard neither.

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Hello, world!

Hi there! Testing Twitter integration 🙂

Edit: it works!

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R Made Easy

Last Thursday I gave an informal introduction to R at the Institute of Botany in Innsbruck. Despite R’s non-user-friendly reputation, the R Made Easy lecture attracted 25 people: Master students, PhD students post-docs, and a few regular employees. During four hours, the basic functionalities of R, and the most recent data handling and visualisation methods (ie, tidyverse) were covered.

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Posted by Benjamin in Teaching, 0 comments

Dexterology

Just a picture today to illustrate a somehow scary fact.

Is it blood from my victims?

In the last years, I filled a dozen of such boxes, each containing a hundred slides. This is around a thousand pollen samples analysed! I should make the sum one day. A bit or R code should do it 😀

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How to prepare clean (pollen) slides

I prepared my first pollen slides during my Master studies, in 2009. I have been introduced how to pipette a portion of the sample and mount it between a slide and cover slide. Some colleagues don’t necessarily seal their slides before analysis, but I personally like to seal them to prevent any leak. This is important to me since I mount pollen samples in glycerine, and it is difficult to get rid of it completely if it ever touched the optic of the microscope.

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LaTeX, then pandoc

I write manuscripts with LaTeX. Yes, it might old-fashioned, compared to Markdown—which I also use—but it fits my needs. I appreciate its handling of references (I mean, from the literature), and of the cross-references. Figure 1 always means figure 1! Unfortunately, I am a bit of an outlier in my discipline, biology, to keep it general. All my colleagues I’m supposed to write manuscripts with rely and the good old Word.

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Should you update your reference collection classification?

Palynologists count on reference collections. These are hundreds of slides from modern samples. Flowers were collected and pollen mounted on slide, for long-term storage. In case of any doubt when identifying a pollen grain, these reference slides can help. Of course, it works when you already have an idea about this pollen grain, but you’re just not quite sure. Such collections are organised in families.

The many slide plates, organised by families, containing the many slides of the reference collection of the Institute of Botany of the University of Innsbruck.
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